| SNPs Id | Position | Function |
| Scaffold_2831 | 26657 | Unannotated |
| Scaffold_2831 | 26716 | Unannotated |
| Scaffold_2831 | 26761 | Unannotated |
| Scaffold_2841 | 33773 | Unannotated |
| Scaffold_2843 | 21139 | Unannotated |
| Scaffold_2843 | 21238 | Unannotated |
| Scaffold_2843 | 21250 | Pre-mRNA cleavage factor Im 25 kDa subunit 2 |
| Scaffold_2844 | 46548 | Unannotated |
| Scaffold_2845 | 11827 | Unannotated |
| Scaffold_2845 | 11867 | Unannotated |
| Scaffold_2845 | 11935 | Unannotated |
| Scaffold_2845 | 11955 | Unannotated |
| Scaffold_2845 | 13407 | Unannotated |
| Scaffold_2848 | 22388 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2849 | 6703 | Unannotated |
| Scaffold_2849 | 47698 | Unannotated |
| Scaffold_2850 | 56 | Unannotated |
| Scaffold_2853 | 19501 | Unannotated |
| Scaffold_2853 | 19529 | Unannotated |
| Scaffold_2853 | 19569 | Unannotated |