| SNPs Id | Position | Function |
| Scaffold_12 | 1687003 | Unannotated |
| Scaffold_12 | 1687011 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_12 | 1990314 | Unannotated |
| Scaffold_12 | 2414673 | Unannotated |
| Scaffold_12 | 2628746 | Unannotated |
| Scaffold_12 | 2633416 | Unannotated |
| Scaffold_12 | 3475452 | S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (Methionine adenosyltransferase) (MAT) |
| Scaffold_12 | 3555322 | Unannotated |
| Scaffold_12 | 3600111 | Unannotated |
| Scaffold_12 | 4170834 | Unannotated |
| Scaffold_12 | 4170848 | Unannotated |
| Scaffold_12 | 4176398 | Unannotated |
| Scaffold_12 | 4176721 | Unannotated |
| Scaffold_13 | 6940 | Unannotated |
| Scaffold_13 | 60063 | Unannotated |
| Scaffold_13 | 340180 | Unannotated |
| Scaffold_13 | 424074 | Unannotated |
| Scaffold_13 | 1185592 | Unannotated |
| Scaffold_13 | 1185593 | Unannotated |
| Scaffold_13 | 1185631 | Unannotated |