| SNPs Id | Position | Function |
| Scaffold_2997 | 3241 | Unannotated |
| Scaffold_2998 | 38308 | Unannotated |
| Scaffold_2998 | 38314 | Unannotated |
| Scaffold_3004 | 41044 | Unannotated |
| Scaffold_3004 | 41088 | Unannotated |
| Scaffold_3005 | 13283 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3005 | 13319 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3005 | 13406 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3005 | 13414 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3005 | 13462 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3007 | 23682 | Unannotated |
| Scaffold_3007 | 36316 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3008 | 34177 | Unannotated |
| Scaffold_3015 | 8650 | UDP-glycosyltransferase 87A1 (EC 2.4.1.-) |
| Scaffold_3015 | 42044 | Unannotated |
| Scaffold_3017 | 7834 | Unannotated |
| Scaffold_3017 | 8990 | Unannotated |
| Scaffold_3017 | 45977 | Unannotated |
| Scaffold_3018 | 2932 | Unannotated |
| Scaffold_3018 | 3512 | Unannotated |