| SNPs Id | Position | Function |
| Scaffold_3139 | 44659 | Unannotated |
| Scaffold_3139 | 44686 | Unannotated |
| Scaffold_3140 | 5512 | Unannotated |
| Scaffold_3140 | 5671 | Unannotated |
| Scaffold_3144 | 9142 | Protein Ycf2 |
| Scaffold_3144 | 47966 | Unannotated |
| Scaffold_3144 | 49251 | Unannotated |
| Scaffold_3144 | 49342 | Unannotated |
| Scaffold_3144 | 49503 | Unannotated |
| Scaffold_3144 | 49532 | Unannotated |
| Scaffold_3145 | 1895 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_3147 | 1808 | ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) |
| Scaffold_3149 | 14036 | Unannotated |
| Scaffold_3151 | 55288 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3152 | 17927 | Unannotated |
| Scaffold_3152 | 18008 | Unannotated |
| Scaffold_3155 | 41746 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3155 | 41779 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3156 | 19662 | Unannotated |
| Scaffold_3158 | 37561 | Unannotated |