| SNPs Id | Position | Function |
| Scaffold_3377 | 30054 | Unannotated |
| Scaffold_3379 | 3102 | Unannotated |
| Scaffold_3380 | 40665 | Unannotated |
| Scaffold_3384 | 36499 | 30S ribosomal protein S2, chloroplastic |
| Scaffold_3384 | 36598 | 30S ribosomal protein S2, chloroplastic |
| Scaffold_3385 | 44742 | Unannotated |
| Scaffold_3385 | 44744 | Unannotated |
| Scaffold_3385 | 44763 | Unannotated |
| Scaffold_3385 | 44864 | Unannotated |
| Scaffold_3385 | 69393 | Unannotated |
| Scaffold_3385 | 70713 | Unannotated |
| Scaffold_3385 | 70874 | Unannotated |
| Scaffold_3385 | 70912 | Unannotated |
| Scaffold_3385 | 70996 | Unannotated |
| Scaffold_3385 | 71123 | Unannotated |
| Scaffold_3385 | 71521 | Unannotated |
| Scaffold_3385 | 74910 | Unannotated |
| Scaffold_3389 | 37160 | Unannotated |
| Scaffold_3391 | 43582 | Unannotated |
| Scaffold_3395 | 23700 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |