| SNPs Id | Position | Function |
| Scaffold_3411 | 18085 | Unannotated |
| Scaffold_3411 | 18096 | Unannotated |
| Scaffold_3411 | 18210 | Unannotated |
| Scaffold_3411 | 18246 | Unannotated |
| Scaffold_3411 | 18321 | Unannotated |
| Scaffold_3411 | 18339 | Unannotated |
| Scaffold_3414 | 5130 | Unannotated |
| Scaffold_3415 | 47891 | Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214) |
| Scaffold_3417 | 47612 | Unannotated |
| Scaffold_3419 | 4440 | Unannotated |
| Scaffold_3419 | 4497 | Unannotated |
| Scaffold_3426 | 44630 | Protein CROWDED NUCLEI 1 (Protein KAKU2) (Protein LITTLE NUCLEI 1) |
| Scaffold_3427 | 17412 | Unannotated |
| Scaffold_3429 | 31183 | Unannotated |
| Scaffold_3430 | 49903 | Unannotated |
| Scaffold_3431 | 43806 | Unannotated |
| Scaffold_3431 | 49377 | Unannotated |
| Scaffold_3431 | 49378 | Unannotated |
| Scaffold_3436 | 6786 | Unannotated |
| Scaffold_3436 | 7306 | Unannotated |