| SNPs Id | Position | Function |
| Scaffold_3533 | 42550 | Unannotated |
| Scaffold_3536 | 20123 | Unannotated |
| Scaffold_3536 | 23621 | Unannotated |
| Scaffold_3536 | 24616 | Unannotated |
| Scaffold_3536 | 24618 | Unannotated |
| Scaffold_3537 | 20253 | Unannotated |
| Scaffold_3537 | 69828 | Unannotated |
| Scaffold_3538 | 14370 | Unannotated |
| Scaffold_3538 | 15015 | Unannotated |
| Scaffold_3538 | 15144 | Unannotated |
| Scaffold_3538 | 15145 | Unannotated |
| Scaffold_3538 | 15341 | Unannotated |
| Scaffold_3540 | 27045 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_3542 | 28859 | Unannotated |
| Scaffold_3544 | 24681 | Unannotated |
| Scaffold_3544 | 43472 | Unannotated |
| Scaffold_3545 | 22748 | Unannotated |
| Scaffold_3549 | 11935 | Unannotated |
| Scaffold_3559 | 42428 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 42451 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |