| SNPs Id | Position | Function |
| Scaffold_3641 | 2739 | Putative ribonuclease H protein At1g65750 (EC 3.1.26.4) |
| Scaffold_3641 | 30927 | Unannotated |
| Scaffold_3641 | 43067 | 50S ribosomal protein L2, chloroplastic (Chloroplastic large ribosomal subunit protein uL2c) (Ribosomal protein CS-L4) |
| Scaffold_3647 | 47329 | Unannotated |
| Scaffold_3647 | 47387 | Unannotated |
| Scaffold_3650 | 57565 | Protein Ycf2 |
| Scaffold_3651 | 3581 | Unannotated |
| Scaffold_3652 | 63080 | Unannotated |
| Scaffold_3652 | 63176 | Unannotated |
| Scaffold_3652 | 63179 | Unannotated |
| Scaffold_3652 | 63220 | Unannotated |
| Scaffold_3652 | 63235 | Unannotated |
| Scaffold_3654 | 8521 | Unannotated |
| Scaffold_3654 | 8545 | Unannotated |
| Scaffold_3657 | 16183 | Unannotated |
| Scaffold_3660 | 15683 | Unannotated |
| Scaffold_3660 | 19667 | Unannotated |
| Scaffold_3660 | 19704 | Unannotated |
| Scaffold_3660 | 19927 | Unannotated |
| Scaffold_3660 | 37702 | Uncharacterized protein ORF91 |