| SNPs Id | Position | Function |
| Scaffold_3697 | 39733 | Unannotated |
| Scaffold_3697 | 42914 | Unannotated |
| Scaffold_3697 | 43170 | Unannotated |
| Scaffold_3699 | 18142 | Unannotated |
| Scaffold_3702 | 11487 | Unannotated |
| Scaffold_3702 | 11498 | Unannotated |
| Scaffold_3702 | 11525 | Unannotated |
| Scaffold_3702 | 11935 | Unannotated |
| Scaffold_3702 | 12214 | Unannotated |
| Scaffold_3704 | 7187 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3707 | 21586 | Unannotated |
| Scaffold_3708 | 20271 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_3708 | 21782 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_3708 | 22720 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 22919 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 22975 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23336 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3708 | 23402 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3711 | 15772 | Unannotated |
| Scaffold_3711 | 15773 | Unannotated |