| SNPs Id | Position | Function |
| Scaffold_3752 | 6960 | Unannotated |
| Scaffold_3757 | 23053 | Unannotated |
| Scaffold_3757 | 23229 | Unannotated |
| Scaffold_3757 | 31737 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3763 | 3735 | Unannotated |
| Scaffold_3763 | 81906 | 50S ribosomal protein L23, chloroplastic |
| Scaffold_3763 | 81924 | 50S ribosomal protein L23, chloroplastic |
| Scaffold_3767 | 50556 | Unannotated |
| Scaffold_3771 | 1636 | Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) |
| Scaffold_3773 | 3213 | NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH dehydrogenase subunit 4) |
| Scaffold_3774 | 7266 | Unannotated |
| Scaffold_3776 | 5064 | Unannotated |
| Scaffold_3784 | 44400 | ABC transporter G family member 32 (ABC transporter ABCG.32) (AtABCG32) (Pleiotropic drug resistance protein 4) (Protein PERMEABLE CUTICLE 1) |
| Scaffold_3785 | 26765 | Unannotated |
| Scaffold_3786 | 29643 | Unannotated |
| Scaffold_3786 | 29682 | Unannotated |
| Scaffold_3787 | 43907 | Unannotated |
| Scaffold_3787 | 43910 | Unannotated |
| Scaffold_3787 | 43973 | Unannotated |
| Scaffold_3787 | 44040 | Unannotated |