| SNPs Id | Position | Function |
| Scaffold_3788 | 45355 | Unannotated |
| Scaffold_3788 | 47165 | Unannotated |
| Scaffold_3789 | 14846 | Unannotated |
| Scaffold_3789 | 15693 | Unannotated |
| Scaffold_3789 | 15825 | Unannotated |
| Scaffold_3789 | 16635 | Uncharacterized mitochondrial protein AtMg00860 (ORF158) |
| Scaffold_3789 | 16922 | Unannotated |
| Scaffold_3789 | 17121 | Unannotated |
| Scaffold_3789 | 17928 | Unannotated |
| Scaffold_3789 | 18314 | Unannotated |
| Scaffold_3789 | 22157 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22197 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22263 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22280 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22287 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3791 | 31656 | Unannotated |
| Scaffold_3793 | 26029 | Unannotated |
| Scaffold_3794 | 1128 | Unannotated |
| Scaffold_3794 | 1135 | Unannotated |
| Scaffold_3794 | 30877 | Unannotated |