| SNPs Id | Position | Function |
| Scaffold_3794 | 30989 | Uncharacterized mitochondrial protein AtMg00860 (ORF158) |
| Scaffold_3798 | 40707 | Unannotated |
| Scaffold_3798 | 40760 | Unannotated |
| Scaffold_3798 | 41383 | Unannotated |
| Scaffold_3799 | 26926 | Unannotated |
| Scaffold_3800 | 15683 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) |
| Scaffold_3800 | 15684 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) |
| Scaffold_3800 | 53932 | Unannotated |
| Scaffold_3801 | 7952 | Unannotated |
| Scaffold_3801 | 8037 | Unannotated |
| Scaffold_3801 | 8039 | Unannotated |
| Scaffold_3802 | 23430 | Unannotated |
| Scaffold_3803 | 20486 | Unannotated |
| Scaffold_3803 | 20745 | Unannotated |
| Scaffold_3805 | 5116 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) |
| Scaffold_3808 | 40822 | Unannotated |
| Scaffold_3809 | 4592 | Transcriptional corepressor LEUNIG_HOMOLOG (Protein MUCILAGE-MODIFIED 1) |
| Scaffold_3809 | 7491 | Unannotated |
| Scaffold_3809 | 7498 | Unannotated |
| Scaffold_3810 | 708 | Unannotated |