| SNPs Id | Position | Function |
| Scaffold_3832 | 31555 | Unannotated |
| Scaffold_3832 | 31590 | Unannotated |
| Scaffold_3835 | 1832 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3841 | 45857 | Unannotated |
| Scaffold_3843 | 32182 | Ribosomal protein S3, mitochondrial |
| Scaffold_3845 | 1514 | Stem-specific protein TSJT1 |
| Scaffold_3848 | 6855 | Unannotated |
| Scaffold_3850 | 50784 | Unannotated |
| Scaffold_3851 | 11127 | Unannotated |
| Scaffold_3854 | 39858 | Unannotated |
| Scaffold_3855 | 8445 | Protein Ycf2 |
| Scaffold_3855 | 30194 | Unannotated |
| Scaffold_3855 | 75904 | Unannotated |
| Scaffold_3855 | 80604 | Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 1) |
| Scaffold_3856 | 80564 | Unannotated |
| Scaffold_3858 | 20648 | Unannotated |
| Scaffold_3861 | 17068 | Unannotated |
| Scaffold_3870 | 41427 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) (Fragment) |
| Scaffold_3872 | 29810 | Unannotated |
| Scaffold_3873 | 47794 | Unannotated |