| SNPs Id | Position | Function |
| Scaffold_3911 | 52784 | Unannotated |
| Scaffold_3915 | 54665 | Unannotated |
| Scaffold_3917 | 37518 | Unannotated |
| Scaffold_3925 | 6946 | Unannotated |
| Scaffold_3925 | 7045 | Unannotated |
| Scaffold_3925 | 7051 | Unannotated |
| Scaffold_3934 | 11702 | Unannotated |
| Scaffold_3934 | 12742 | Unannotated |
| Scaffold_3934 | 41996 | Unannotated |
| Scaffold_3934 | 41998 | Unannotated |
| Scaffold_3934 | 42453 | ATP synthase subunit alpha, mitochondrial |
| Scaffold_3937 | 15820 | Serine/threonine-protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) (Type one protein phosphatase 4) |
| Scaffold_3937 | 19393 | Unannotated |
| Scaffold_3942 | 33310 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3942 | 33363 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3942 | 33408 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3942 | 35307 | Unannotated |
| Scaffold_3946 | 14971 | Unannotated |
| Scaffold_3954 | 35706 | Unannotated |
| Scaffold_3954 | 35788 | Unannotated |