| SNPs Id | Position | Function |
| Scaffold_3969 | 45814 | Unannotated |
| Scaffold_3969 | 46190 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3969 | 46279 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3969 | 46345 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3969 | 46381 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3971 | 25349 | Unannotated |
| Scaffold_3972 | 56405 | Unannotated |
| Scaffold_3975 | 11716 | Unannotated |
| Scaffold_3978 | 9225 | Unannotated |
| Scaffold_3979 | 4126 | Unannotated |
| Scaffold_3980 | 41303 | Unannotated |
| Scaffold_3980 | 41368 | Unannotated |
| Scaffold_3980 | 41385 | Unannotated |
| Scaffold_3980 | 41544 | Unannotated |
| Scaffold_3980 | 41960 | Unannotated |
| Scaffold_3980 | 41980 | Unannotated |
| Scaffold_3980 | 42071 | Unannotated |
| Scaffold_3980 | 42110 | Unannotated |
| Scaffold_3980 | 42128 | Unannotated |
| Scaffold_3980 | 42159 | Unannotated |