| SNPs Id | Position | Function |
| Scaffold_7 | 1175089 | Unannotated |
| Scaffold_7 | 1429775 | Unannotated |
| Scaffold_7 | 1512755 | Unannotated |
| Scaffold_7 | 1614825 | Unannotated |
| Scaffold_7 | 1884297 | Unannotated |
| Scaffold_7 | 1886887 | Unannotated |
| Scaffold_7 | 1899692 | Unannotated |
| Scaffold_8 | 197932 | Unannotated |
| Scaffold_8 | 292111 | Unannotated |
| Scaffold_8 | 1002890 | Unannotated |
| Scaffold_8 | 1429609 | Unannotated |
| Scaffold_8 | 1879947 | Unannotated |
| Scaffold_8 | 1972830 | Unannotated |
| Scaffold_8 | 2020703 | Unannotated |
| Scaffold_8 | 2341258 | Unannotated |
| Scaffold_8 | 2427277 | Unannotated |
| Scaffold_8 | 2580065 | Unannotated |
| Scaffold_8 | 2580066 | Unannotated |
| Scaffold_8 | 2606846 | Cytochrome P450 78A3 (EC 1.14.-.-) |
| Scaffold_8 | 2914122 | Probable protein phosphatase 2C 9 (OsPP2C09) (EC 3.1.3.16) |