| SNPs Id | Position | Function |
| Scaffold_12 | 1087050 | Unannotated |
| Scaffold_12 | 1115602 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.2) |
| Scaffold_12 | 1307371 | Unannotated |
| Scaffold_12 | 1614017 | Unannotated |
| Scaffold_12 | 1648332 | Unannotated |
| Scaffold_12 | 1650078 | Unannotated |
| Scaffold_12 | 1687274 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_12 | 2046281 | Unannotated |
| Scaffold_12 | 2189730 | Unannotated |
| Scaffold_12 | 2343436 | Unannotated |
| Scaffold_12 | 2352090 | Receptor-like protein kinase 2 (EC 2.7.11.1) |
| Scaffold_12 | 2609401 | Unannotated |
| Scaffold_12 | 3292097 | Unannotated |
| Scaffold_12 | 3780231 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3882895 | Unannotated |
| Scaffold_12 | 3995465 | Unannotated |
| Scaffold_12 | 4193483 | Unannotated |
| Scaffold_12 | 4193490 | Unannotated |
| Scaffold_12 | 4225954 | Unannotated |
| Scaffold_13 | 55933 | Unannotated |