| SNPs Id | Position | Function |
| Scaffold_18 | 788190 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (HMGR) (HMGR1) (EC 1.1.1.34) |
| Scaffold_18 | 815466 | Unannotated |
| Scaffold_18 | 948099 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_18 | 1228660 | Unannotated |
| Scaffold_18 | 2277616 | F-box/kelch-repeat protein At1g67480 |
| Scaffold_18 | 2340320 | Unannotated |
| Scaffold_19 | 488534 | Unannotated |
| Scaffold_19 | 1416793 | Unannotated |
| Scaffold_19 | 1534051 | Unannotated |
| Scaffold_19 | 1594348 | Unannotated |
| Scaffold_19 | 1628295 | Sucrose transport protein (Sucrose permease) (Sucrose-proton symporter) |
| Scaffold_19 | 1700766 | Unannotated |
| Scaffold_19 | 2084340 | Unannotated |
| Scaffold_20 | 92372 | Unannotated |
| Scaffold_20 | 92396 | Unannotated |
| Scaffold_20 | 188854 | Unannotated |
| Scaffold_20 | 269634 | Unannotated |
| Scaffold_20 | 508259 | Importin subunit alpha-1a |
| Scaffold_20 | 532432 | Unannotated |
| Scaffold_20 | 717618 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 |