| SNPs Id | Position | Function |
| Scaffold_25 | 1421935 | Unannotated |
| Scaffold_25 | 1501284 | Unannotated |
| Scaffold_25 | 1542225 | Unannotated |
| Scaffold_25 | 1695426 | Unannotated |
| Scaffold_26 | 574026 | Unannotated |
| Scaffold_26 | 609977 | Unannotated |
| Scaffold_26 | 1367498 | Unannotated |
| Scaffold_26 | 1370017 | Unannotated |
| Scaffold_26 | 1533524 | Unannotated |
| Scaffold_26 | 1533525 | Unannotated |
| Scaffold_26 | 1537210 | Threonine--tRNA ligase, chloroplastic/mitochondrial 2 (EC 6.1.1.3) (Protein EMBRYO DEFECTIVE 2761) (Threonyl-tRNA synthetase) (ThrRS) |
| Scaffold_26 | 2059417 | Unannotated |
| Scaffold_27 | 113999 | Unannotated |
| Scaffold_27 | 304459 | Unannotated |
| Scaffold_27 | 319597 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 480791 | Unannotated |
| Scaffold_27 | 487857 | Unannotated |
| Scaffold_27 | 643323 | Unannotated |
| Scaffold_27 | 767795 | Unannotated |
| Scaffold_27 | 809972 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |