| SNPs Id | Position | Function |
| Scaffold_27 | 816414 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 1348568 | Unannotated |
| Scaffold_27 | 1484489 | Unannotated |
| Scaffold_27 | 1808561 | Unannotated |
| Scaffold_27 | 1856792 | Unannotated |
| Scaffold_28 | 372612 | Unannotated |
| Scaffold_28 | 496529 | Unannotated |
| Scaffold_28 | 571892 | Unannotated |
| Scaffold_28 | 574965 | Unannotated |
| Scaffold_28 | 793417 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_28 | 794210 | Unannotated |
| Scaffold_28 | 800336 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_28 | 801833 | Unannotated |
| Scaffold_28 | 913291 | Unannotated |
| Scaffold_28 | 1691464 | Unannotated |
| Scaffold_28 | 1691466 | Unannotated |
| Scaffold_28 | 1931007 | Unannotated |
| Scaffold_29 | 196258 | Unannotated |
| Scaffold_29 | 199219 | Unannotated |
| Scaffold_29 | 391964 | Unannotated |