| SNPs Id | Position | Function |
| Scaffold_46 | 1710367 | Unannotated |
| Scaffold_46 | 1795737 | Unannotated |
| Scaffold_46 | 1886643 | Unannotated |
| Scaffold_47 | 369134 | Unannotated |
| Scaffold_47 | 518958 | Unannotated |
| Scaffold_47 | 654536 | Unannotated |
| Scaffold_47 | 1099094 | Unannotated |
| Scaffold_47 | 1127883 | Unannotated |
| Scaffold_47 | 1356959 | Unannotated |
| Scaffold_47 | 1757521 | Unannotated |
| Scaffold_48 | 12570 | Unannotated |
| Scaffold_48 | 12571 | Unannotated |
| Scaffold_48 | 232105 | Unannotated |
| Scaffold_48 | 389954 | Pentatricopeptide repeat-containing protein At1g03560, mitochondrial |
| Scaffold_48 | 702998 | Unannotated |
| Scaffold_48 | 1344016 | Unannotated |
| Scaffold_48 | 1809072 | Unannotated |
| Scaffold_48 | 1994666 | Unannotated |
| Scaffold_48 | 2086020 | Unannotated |
| Scaffold_48 | 2091898 | Unannotated |