| SNPs Id | Position | Function |
| Scaffold_56 | 1085895 | Unannotated |
| Scaffold_57 | 509494 | Unannotated |
| Scaffold_57 | 579174 | Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2) |
| Scaffold_57 | 632606 | Unannotated |
| Scaffold_57 | 934181 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_57 | 1043221 | Unannotated |
| Scaffold_57 | 1312145 | Unannotated |
| Scaffold_57 | 1333002 | Unannotated |
| Scaffold_57 | 1333003 | Unannotated |
| Scaffold_57 | 1340586 | Unannotated |
| Scaffold_57 | 1377203 | Unannotated |
| Scaffold_57 | 1529595 | Unannotated |
| Scaffold_58 | 67458 | Unannotated |
| Scaffold_58 | 190618 | Unannotated |
| Scaffold_58 | 341951 | Unannotated |
| Scaffold_58 | 341953 | Unannotated |
| Scaffold_58 | 844094 | Unannotated |
| Scaffold_58 | 1015539 | Unannotated |
| Scaffold_58 | 1315655 | Unannotated |
| Scaffold_59 | 127558 | Unannotated |