| SNPs Id | Position | Function |
| Scaffold_59 | 1295900 | Unannotated |
| Scaffold_59 | 1494228 | Unannotated |
| Scaffold_60 | 370640 | Unannotated |
| Scaffold_60 | 537554 | U-box domain-containing protein 25 (EC 2.3.2.27) (Plant U-box protein 25) (RING-type E3 ubiquitin transferase PUB25) |
| Scaffold_60 | 646712 | Protein indeterminate-domain 9 (ID1-like zinc finger protein 1) |
| Scaffold_60 | 647667 | Unannotated |
| Scaffold_60 | 738148 | Unannotated |
| Scaffold_60 | 793375 | Unannotated |
| Scaffold_60 | 847555 | Starch synthase 3, chloroplastic/amyloplastic (AtSS3) (EC 2.4.1.21) (Soluble starch synthase III) |
| Scaffold_60 | 1196330 | Unannotated |
| Scaffold_60 | 1302087 | Unannotated |
| Scaffold_60 | 1326588 | Unannotated |
| Scaffold_61 | 19354 | Unannotated |
| Scaffold_61 | 19355 | Unannotated |
| Scaffold_61 | 71276 | Unannotated |
| Scaffold_61 | 1048062 | Unannotated |
| Scaffold_61 | 1178734 | Unannotated |
| Scaffold_61 | 1178737 | Unannotated |
| Scaffold_62 | 226435 | Unannotated |
| Scaffold_62 | 278977 | Unannotated |