| SNPs Id | Position | Function |
| Scaffold_337 | 30871 | Unannotated |
| Scaffold_337 | 32872 | Unannotated |
| Scaffold_343 | 79717 | Unannotated |
| Scaffold_347 | 69274 | Unannotated |
| Scaffold_359 | 5158 | Polyadenylate-binding protein RBP47B' (Poly(A)-binding protein RBP47B') (RNA-binding protein 47B') (AtRBP47B prime) (AtRBP47B') |
| Scaffold_367 | 15663 | Unannotated |
| Scaffold_378 | 15743 | Unannotated |
| Scaffold_389 | 9962 | Unannotated |
| Scaffold_389 | 9964 | Unannotated |
| Scaffold_400 | 9432 | Metacaspase-5 (AtMC5) (EC 3.4.22.-) (Metacaspase 2b) (AtMCP2b) (Metacaspase-6) |
| Scaffold_405 | 44526 | Unannotated |
| Scaffold_417 | 10596 | Unannotated |
| Scaffold_423 | 74417 | Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) antiporter CAX2) (Ca(2+)/H(+) exchanger 2) (Protein CATION EXCHANGER 2) |
| Scaffold_428 | 31704 | Unannotated |
| Scaffold_428 | 31705 | Unannotated |
| Scaffold_428 | 53787 | Unannotated |
| Scaffold_429 | 76726 | Probable aquaporin TIP3-1 (Tonoplast intrinsic protein 3-1) (OsTIP3;1) |
| Scaffold_440 | 14764 | Unannotated |
| Scaffold_441 | 53121 | Unannotated |
| Scaffold_445 | 32560 | Unannotated |