| SNPs Id | Position | Function |
| Scaffold_513 | 72254 | Unannotated |
| Scaffold_514 | 5469 | Unannotated |
| Scaffold_520 | 61364 | Unannotated |
| Scaffold_523 | 49195 | Calnexin homolog |
| Scaffold_524 | 24247 | Unannotated |
| Scaffold_534 | 59833 | WEB family protein At5g16730, chloroplastic |
| Scaffold_539 | 64388 | Unannotated |
| Scaffold_545 | 24631 | Unannotated |
| Scaffold_545 | 25054 | Unannotated |
| Scaffold_545 | 25101 | Unannotated |
| Scaffold_545 | 25113 | Unannotated |
| Scaffold_545 | 25159 | Unannotated |
| Scaffold_545 | 32784 | Unannotated |
| Scaffold_545 | 48351 | Unannotated |
| Scaffold_556 | 50876 | Unannotated |
| Scaffold_583 | 42752 | Unannotated |
| Scaffold_591 | 50368 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (32 kDa thylakoid membrane protein) (Photosystem II Q(B) protein) |
| Scaffold_593 | 19612 | Unannotated |
| Scaffold_594 | 21326 | Unannotated |
| Scaffold_596 | 5892 | Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) |