| SNPs Id | Position | Function |
| Scaffold_596 | 5893 | Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) |
| Scaffold_609 | 5358 | Unannotated |
| Scaffold_615 | 2183 | Serine/threonine-protein kinase BSK6 (EC 2.7.11.1) (Brassinosteroid-signaling kinase 6) |
| Scaffold_620 | 5901 | Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (Type one protein phosphatase 3) |
| Scaffold_620 | 28361 | Unannotated |
| Scaffold_620 | 28558 | Unannotated |
| Scaffold_625 | 13129 | CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER 2) (AtCFM2) |
| Scaffold_628 | 11705 | Unannotated |
| Scaffold_629 | 26062 | Hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase) |
| Scaffold_634 | 61359 | Unannotated |
| Scaffold_641 | 28364 | Unannotated |
| Scaffold_644 | 9547 | Unannotated |
| Scaffold_644 | 20934 | Unannotated |
| Scaffold_649 | 12395 | Unannotated |
| Scaffold_654 | 24254 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |
| Scaffold_657 | 44037 | Unannotated |
| Scaffold_657 | 45222 | Unannotated |
| Scaffold_662 | 55354 | Unannotated |
| Scaffold_662 | 59360 | Unannotated |
| Scaffold_665 | 338 | Unannotated |