| SNPs Id | Position | Function |
| Scaffold_668 | 7609 | Probable calcium-binding protein CML36 (Calmodulin-like protein 36) |
| Scaffold_670 | 26272 | Unannotated |
| Scaffold_672 | 30400 | Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) |
| Scaffold_672 | 30810 | Scarecrow-like protein 15 (AtSCL15) (GRAS family protein 25) (AtGRAS-25) |
| Scaffold_673 | 4575 | Unannotated |
| Scaffold_675 | 26059 | Unannotated |
| Scaffold_679 | 25926 | Unannotated |
| Scaffold_679 | 25929 | Unannotated |
| Scaffold_685 | 29571 | Unannotated |
| Scaffold_691 | 19697 | Unannotated |
| Scaffold_703 | 66945 | Unannotated |
| Scaffold_712 | 47511 | Unannotated |
| Scaffold_712 | 58189 | Thioredoxin M4, chloroplastic (AtTrxm4) |
| Scaffold_721 | 10571 | Rust resistance kinase Lr10 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10) |
| Scaffold_722 | 46845 | Unannotated |
| Scaffold_727 | 3476 | Ammonium transporter 2 member 3 (OsAMT2;3) |
| Scaffold_732 | 46763 | Unannotated |
| Scaffold_739 | 64940 | Unannotated |
| Scaffold_739 | 64954 | Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic (PPIase CYP37) (EC 5.2.1.8) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (TLP38) (p38) |
| Scaffold_741 | 10322 | Unannotated |