| SNPs Id | Position | Function |
| Scaffold_792 | 8165 | Unannotated |
| Scaffold_792 | 8420 | Unannotated |
| Scaffold_805 | 1834 | Unannotated |
| Scaffold_812 | 22250 | Unannotated |
| Scaffold_817 | 19328 | Tryptophan synthase beta chain 1, chloroplastic (EC 4.2.1.20) |
| Scaffold_818 | 11874 | Unannotated |
| Scaffold_818 | 60270 | Unannotated |
| Scaffold_819 | 55339 | Unannotated |
| Scaffold_830 | 17214 | Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) |
| Scaffold_830 | 17215 | Leucine-rich repeat extensin-like protein 6 (AtLRX6) (LRR/EXTENSIN6) (Cell wall hydroxyproline-rich glycoprotein) |
| Scaffold_833 | 10837 | Unannotated |
| Scaffold_840 | 25291 | Unannotated |
| Scaffold_853 | 1358 | Unannotated |
| Scaffold_861 | 61714 | Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic |
| Scaffold_864 | 41641 | Unannotated |
| Scaffold_866 | 20160 | Unannotated |
| Scaffold_868 | 8058 | Unannotated |
| Scaffold_870 | 61338 | Unannotated |
| Scaffold_875 | 27867 | Unannotated |
| Scaffold_877 | 3212 | Unannotated |