| SNPs Id | Position | Function |
| Scaffold_1487 | 8169 | Unannotated |
| Scaffold_1487 | 8170 | Unannotated |
| Scaffold_1491 | 41899 | Unannotated |
| Scaffold_1496 | 32471 | Unannotated |
| Scaffold_1498 | 48162 | Unannotated |
| Scaffold_1498 | 48911 | Unannotated |
| Scaffold_1507 | 30480 | Unannotated |
| Scaffold_1508 | 41369 | Unannotated |
| Scaffold_1509 | 34144 | Unannotated |
| Scaffold_1522 | 772 | Unannotated |
| Scaffold_1535 | 18975 | Unannotated |
| Scaffold_1561 | 3096 | Unannotated |
| Scaffold_1561 | 3097 | Unannotated |
| Scaffold_1577 | 3042 | Unannotated |
| Scaffold_1580 | 7448 | Unannotated |
| Scaffold_1580 | 7473 | Unannotated |
| Scaffold_1585 | 5216 | Heat shock 70 kDa protein BIP1 (Luminal-binding protein 1) (OsBiP1) |
| Scaffold_1588 | 972 | Unannotated |
| Scaffold_1615 | 44658 | Unannotated |
| Scaffold_1625 | 20329 | Receptor-like protein 30 (AtRLP30) |