| SNPs Id | Position | Function |
| Scaffold_1626 | 38929 | Unannotated |
| Scaffold_1633 | 46132 | Unannotated |
| Scaffold_1647 | 17298 | Unannotated |
| Scaffold_1647 | 17317 | Unannotated |
| Scaffold_1647 | 18361 | Unannotated |
| Scaffold_1648 | 43162 | Unannotated |
| Scaffold_1651 | 30988 | Unannotated |
| Scaffold_1666 | 41598 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |
| Scaffold_1679 | 42918 | Unannotated |
| Scaffold_1685 | 15060 | Unannotated |
| Scaffold_1687 | 28166 | Unannotated |
| Scaffold_1687 | 29989 | Unannotated |
| Scaffold_1694 | 42397 | Unannotated |
| Scaffold_1699 | 31990 | Unannotated |
| Scaffold_1699 | 31992 | Unannotated |
| Scaffold_1699 | 32320 | Unannotated |
| Scaffold_1745 | 14856 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_1769 | 24784 | Unannotated |
| Scaffold_1790 | 25586 | Unannotated |
| Scaffold_1802 | 40968 | Unannotated |