| SNPs Id | Position | Function |
| Scaffold_2464 | 62867 | Protein ELF4-LIKE 4 |
| Scaffold_2474 | 57595 | Unannotated |
| Scaffold_2479 | 128364 | DELLA protein RGL1 (GRAS family protein 9) (AtGRAS-9) (RGA-like protein 1) (RGA-like protein) |
| Scaffold_2480 | 115261 | Unannotated |
| Scaffold_2481 | 90351 | Unannotated |
| Scaffold_2484 | 3706 | Unannotated |
| Scaffold_2485 | 104236 | Chloride channel protein CLC-c (AtCLC-c) (CBS domain-containing protein CBSCLC4) |
| Scaffold_2485 | 122642 | Unannotated |
| Scaffold_2488 | 4963 | Unannotated |
| Scaffold_2493 | 49601 | Unannotated |
| Scaffold_2497 | 110559 | Unannotated |
| Scaffold_2501 | 35406 | Unannotated |
| Scaffold_2502 | 46000 | Unannotated |
| Scaffold_2502 | 46001 | Unannotated |
| Scaffold_2502 | 46379 | Unannotated |
| Scaffold_2504 | 69831 | Unannotated |
| Scaffold_2505 | 25708 | Sugar transport protein MST3 (Monosaccharide transporter 3) (OsMST3) (Sugar:proton symporter MST3) |
| Scaffold_2507 | 17637 | Protein unc-13 homolog (Protein PROTON ATPASE TRANSLOCATION CONTROL 1) |
| Scaffold_2507 | 83869 | Unannotated |
| Scaffold_2509 | 2744 | Unannotated |