| SNPs Id | Position | Function |
| Scaffold_2554 | 13072 | Unannotated |
| Scaffold_2555 | 93423 | Unannotated |
| Scaffold_2558 | 46637 | Unannotated |
| Scaffold_2559 | 95818 | Unannotated |
| Scaffold_2560 | 92917 | 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2) |
| Scaffold_2561 | 18969 | Cytochrome P450 98A3 (EC 1.14.-.-) (Protein REDUCED EPIDERMAL FLUORESCENCE 8) (p-coumaroylshikimate/quinate 3'-hydrolxylase) (C3'H) |
| Scaffold_2561 | 18970 | Cytochrome P450 98A3 (EC 1.14.-.-) (Protein REDUCED EPIDERMAL FLUORESCENCE 8) (p-coumaroylshikimate/quinate 3'-hydrolxylase) (C3'H) |
| Scaffold_2561 | 21462 | Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (C4H) (CA4H) (Cytochrome P450 73) (Cytochrome P450C4H) |
| Scaffold_2561 | 21463 | Unannotated |
| Scaffold_2562 | 95121 | Unannotated |
| Scaffold_2570 | 22222 | Unannotated |
| Scaffold_2570 | 61501 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2572 | 72010 | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Protein ORGANELLE TRANSCRIPT PROCESSING 84) |
| Scaffold_2583 | 8799 | Unannotated |
| Scaffold_2585 | 33510 | CLP protease regulatory subunit CLPX3, mitochondrial |
| Scaffold_2585 | 72282 | Unannotated |
| Scaffold_2597 | 27624 | Unannotated |
| Scaffold_2598 | 26987 | Unannotated |
| Scaffold_2605 | 34524 | Unannotated |
| Scaffold_2611 | 4124 | Unannotated |