| SNPs Id | Position | Function |
| Scaffold_2699 | 140895 | Unannotated |
| Scaffold_2699 | 225304 | Unannotated |
| Scaffold_2699 | 225306 | Unannotated |
| Scaffold_2703 | 19033 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_2705 | 31204 | Unannotated |
| Scaffold_2706 | 1038 | Unannotated |
| Scaffold_2707 | 42126 | Cryptochrome DASH, chloroplastic/mitochondrial (Cryptochrome-3) |
| Scaffold_2708 | 13174 | Unannotated |
| Scaffold_2714 | 43979 | Unannotated |
| Scaffold_2720 | 20308 | 50S ribosomal protein L20, chloroplastic |
| Scaffold_2720 | 20309 | 50S ribosomal protein L20, chloroplastic |
| Scaffold_2721 | 49960 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) |
| Scaffold_2723 | 10293 | Unannotated |
| Scaffold_2726 | 43170 | Unannotated |
| Scaffold_2733 | 32358 | Unannotated |
| Scaffold_2734 | 2151 | Unannotated |
| Scaffold_2734 | 7629 | Unannotated |
| Scaffold_2735 | 8311 | Unannotated |
| Scaffold_2741 | 49569 | 40S ribosomal protein S16 |
| Scaffold_2743 | 20571 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |