| SNPs Id | Position | Function |
| Scaffold_27 | 1570013 | Unannotated |
| Scaffold_27 | 1692626 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_27 | 1735505 | Unannotated |
| Scaffold_27 | 1808309 | Unannotated |
| Scaffold_27 | 1809554 | Unannotated |
| Scaffold_28 | 149941 | Unannotated |
| Scaffold_28 | 496442 | Unannotated |
| Scaffold_28 | 574127 | Unannotated |
| Scaffold_28 | 659186 | Unannotated |
| Scaffold_28 | 669906 | Unannotated |
| Scaffold_28 | 791443 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.13.3) (EC 2.7.9.4) (Starch-related R1 protein) |
| Scaffold_28 | 974638 | Putative phospholipid-transporting ATPase 9 (AtALA9) (EC 3.6.3.1) (Aminophospholipid flippase 9) |
| Scaffold_28 | 987116 | Unannotated |
| Scaffold_28 | 1172795 | Unannotated |
| Scaffold_28 | 1884122 | Unannotated |
| Scaffold_28 | 1884198 | Unannotated |
| Scaffold_28 | 1928344 | Unannotated |
| Scaffold_28 | 1931006 | Unannotated |
| Scaffold_29 | 3342 | Unannotated |
| Scaffold_29 | 199057 | Unannotated |