| SNPs Id | Position | Function |
| Scaffold_3179 | 5904 | Unannotated |
| Scaffold_3180 | 32904 | Unannotated |
| Scaffold_3180 | 33481 | Unannotated |
| Scaffold_3180 | 33872 | Unannotated |
| Scaffold_3181 | 40072 | Unannotated |
| Scaffold_3181 | 40077 | Unannotated |
| Scaffold_3184 | 42312 | Unannotated |
| Scaffold_3185 | 241 | Unannotated |
| Scaffold_3185 | 455 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3185 | 577 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3186 | 31522 | Unannotated |
| Scaffold_3186 | 31523 | Unannotated |
| Scaffold_3187 | 53844 | Unannotated |
| Scaffold_3195 | 18303 | Unannotated |
| Scaffold_3196 | 12716 | Unannotated |
| Scaffold_3196 | 12718 | Unannotated |
| Scaffold_3197 | 12985 | Unannotated |
| Scaffold_3197 | 12986 | Unannotated |
| Scaffold_3198 | 59687 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3200 | 19134 | Unannotated |