| SNPs Id | Position | Function |
| Scaffold_3259 | 15630 | 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24) |
| Scaffold_3269 | 42506 | Unannotated |
| Scaffold_3271 | 2204 | Unannotated |
| Scaffold_3273 | 10458 | Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) |
| Scaffold_3273 | 37645 | Unannotated |
| Scaffold_3274 | 50865 | Unannotated |
| Scaffold_3277 | 17375 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3277 | 17378 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3277 | 52496 | Unannotated |
| Scaffold_3280 | 4380 | Unannotated |
| Scaffold_3280 | 4893 | Unannotated |
| Scaffold_3280 | 5012 | Unannotated |
| Scaffold_3280 | 6091 | Unannotated |
| Scaffold_3288 | 6292 | Unannotated |
| Scaffold_3289 | 40992 | Unannotated |
| Scaffold_3298 | 16837 | Unannotated |
| Scaffold_3299 | 27097 | Unannotated |
| Scaffold_3299 | 27129 | Unannotated |
| Scaffold_3299 | 27166 | Unannotated |
| Scaffold_3299 | 27174 | Unannotated |