| SNPs Id | Position | Function |
| Scaffold_3299 | 27360 | Unannotated |
| Scaffold_3301 | 35326 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3301 | 39085 | Unannotated |
| Scaffold_3301 | 39086 | Unannotated |
| Scaffold_3302 | 2536 | Unannotated |
| Scaffold_3302 | 3550 | Unannotated |
| Scaffold_3306 | 29225 | Unannotated |
| Scaffold_3306 | 38690 | Unannotated |
| Scaffold_3306 | 39187 | Unannotated |
| Scaffold_3306 | 39380 | Unannotated |
| Scaffold_3306 | 39443 | Unannotated |
| Scaffold_3306 | 39710 | Unannotated |
| Scaffold_3306 | 40326 | Unannotated |
| Scaffold_3307 | 60581 | Unannotated |
| Scaffold_3320 | 29338 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3320 | 29340 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3321 | 33105 | Unannotated |
| Scaffold_3321 | 33304 | Unannotated |
| Scaffold_3323 | 19174 | Trigger factor-like protein TIG, Chloroplastic (EC 5.2.1.8) (Immunophilin TIG) (Peptidyl-prolyl cis-trans isomerase TIG) (PPIase TIG) (Rotamase) |
| Scaffold_3325 | 28549 | Unannotated |