| SNPs Id | Position | Function |
| Scaffold_3325 | 60541 | Unannotated |
| Scaffold_3329 | 19094 | FRIGIDA-like protein 3 |
| Scaffold_3330 | 2305 | Unannotated |
| Scaffold_3332 | 24016 | Uncharacterized mitochondrial protein AtMg00860 (ORF158) |
| Scaffold_3336 | 6291 | Unannotated |
| Scaffold_3340 | 43089 | Unannotated |
| Scaffold_3343 | 2432 | Unannotated |
| Scaffold_3349 | 3927 | Unannotated |
| Scaffold_3350 | 80162 | Unannotated |
| Scaffold_3355 | 28302 | Unannotated |
| Scaffold_3355 | 28303 | Unannotated |
| Scaffold_3355 | 31697 | Unannotated |
| Scaffold_3355 | 44836 | Unannotated |
| Scaffold_3360 | 30550 | Unannotated |
| Scaffold_3360 | 35734 | Unannotated |
| Scaffold_3360 | 35735 | Unannotated |
| Scaffold_3362 | 3241 | Unannotated |
| Scaffold_3365 | 7743 | Unannotated |
| Scaffold_3365 | 7758 | Unannotated |
| Scaffold_3365 | 24218 | Unannotated |