| SNPs Id | Position | Function |
| Scaffold_3540 | 27169 | Unannotated |
| Scaffold_3544 | 43571 | Unannotated |
| Scaffold_3559 | 24343 | Unannotated |
| Scaffold_3559 | 42599 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43219 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3559 | 43697 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3565 | 106 | Transcriptional corepressor LEUNIG (Protein ROTUNDA2) |
| Scaffold_3566 | 4100 | Unannotated |
| Scaffold_3566 | 44639 | Unannotated |
| Scaffold_3566 | 44767 | Unannotated |
| Scaffold_3568 | 13083 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3570 | 29035 | Unannotated |
| Scaffold_3574 | 51008 | Unannotated |
| Scaffold_3574 | 51441 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3576 | 23825 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_3576 | 23889 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_3581 | 52489 | Unannotated |
| Scaffold_3584 | 15149 | Unannotated |
| Scaffold_3589 | 18724 | Unannotated |
| Scaffold_3595 | 12332 | Unannotated |