| SNPs Id | Position | Function |
| Scaffold_3595 | 51883 | Unannotated |
| Scaffold_3597 | 2732 | Unannotated |
| Scaffold_3602 | 17713 | Unannotated |
| Scaffold_3602 | 17714 | Unannotated |
| Scaffold_3602 | 19337 | Unannotated |
| Scaffold_3602 | 41629 | Unannotated |
| Scaffold_3603 | 15985 | Unannotated |
| Scaffold_3605 | 9462 | Unannotated |
| Scaffold_3611 | 1918 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3611 | 2480 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3611 | 2652 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3612 | 41712 | Unannotated |
| Scaffold_3612 | 41896 | Unannotated |
| Scaffold_3612 | 42100 | Unannotated |
| Scaffold_3617 | 7541 | Unannotated |
| Scaffold_3622 | 4681 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3625 | 26127 | Unannotated |
| Scaffold_3632 | 133 | Unannotated |
| Scaffold_3633 | 35345 | Unannotated |
| Scaffold_3633 | 35438 | Unannotated |