| SNPs Id | Position | Function |
| Scaffold_3635 | 17916 | CLIP-associated protein (AtCLASP) |
| Scaffold_3641 | 30929 | Unannotated |
| Scaffold_3642 | 20222 | Protein Ycf2 |
| Scaffold_3651 | 51983 | Unannotated |
| Scaffold_3651 | 71127 | Unannotated |
| Scaffold_3652 | 60367 | Unannotated |
| Scaffold_3652 | 63391 | Unannotated |
| Scaffold_3654 | 8544 | Unannotated |
| Scaffold_3654 | 29796 | Unannotated |
| Scaffold_3654 | 29797 | Unannotated |
| Scaffold_3660 | 37700 | Uncharacterized protein ORF91 |
| Scaffold_3660 | 38019 | Unannotated |
| Scaffold_3661 | 19641 | Unannotated |
| Scaffold_3663 | 12359 | ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3663 | 45391 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_3664 | 14429 | Unannotated |
| Scaffold_3669 | 7649 | Unannotated |
| Scaffold_3671 | 9109 | Unannotated |
| Scaffold_3672 | 1967 | Unannotated |
| Scaffold_3673 | 7792 | Unannotated |