| SNPs Id | Position | Function |
| Scaffold_3757 | 23020 | Unannotated |
| Scaffold_3757 | 23131 | Unannotated |
| Scaffold_3757 | 48045 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3757 | 48046 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3763 | 3488 | Unannotated |
| Scaffold_3766 | 17849 | Unannotated |
| Scaffold_3767 | 50555 | Unannotated |
| Scaffold_3767 | 50562 | Unannotated |
| Scaffold_3771 | 1637 | Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) |
| Scaffold_3771 | 12898 | Unannotated |
| Scaffold_3771 | 13309 | Unannotated |
| Scaffold_3781 | 40881 | Unannotated |
| Scaffold_3789 | 17026 | Unannotated |
| Scaffold_3789 | 22381 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22437 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22459 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22467 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22475 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22648 | Uncharacterized mitochondrial protein AtMg00240 (ORF111a) |
| Scaffold_3792 | 35053 | Unannotated |