| SNPs Id | Position | Function |
| Scaffold_3794 | 30878 | Unannotated |
| Scaffold_3794 | 30987 | Uncharacterized mitochondrial protein AtMg00860 (ORF158) |
| Scaffold_3798 | 41235 | Unannotated |
| Scaffold_3800 | 15806 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) |
| Scaffold_3800 | 15807 | ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) |
| Scaffold_3803 | 20618 | Unannotated |
| Scaffold_3805 | 5117 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) |
| Scaffold_3805 | 5245 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) |
| Scaffold_3805 | 5248 | NAD(P)H-quinone oxidoreductase subunit I, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) |
| Scaffold_3808 | 40830 | Unannotated |
| Scaffold_3809 | 7614 | Unannotated |
| Scaffold_3814 | 73622 | Unannotated |
| Scaffold_3816 | 7058 | Unannotated |
| Scaffold_3821 | 45637 | Unannotated |
| Scaffold_3822 | 3081 | NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 5) (NADH-plastoquinone oxidoreductase subunit 5) |
| Scaffold_3823 | 21968 | Unannotated |
| Scaffold_3824 | 10579 | Unannotated |
| Scaffold_3824 | 10843 | Unannotated |
| Scaffold_3824 | 10845 | Unannotated |
| Scaffold_3824 | 17309 | Unannotated |