| SNPs Id | Position | Function |
| Scaffold_3835 | 1822 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3841 | 45858 | Unannotated |
| Scaffold_3845 | 1546 | Stem-specific protein TSJT1 |
| Scaffold_3846 | 19631 | Unannotated |
| Scaffold_3853 | 13205 | Unannotated |
| Scaffold_3853 | 13206 | Unannotated |
| Scaffold_3854 | 39614 | Unannotated |
| Scaffold_3856 | 80466 | Unannotated |
| Scaffold_3859 | 40163 | Unannotated |
| Scaffold_3859 | 40164 | Unannotated |
| Scaffold_3860 | 17063 | Unannotated |
| Scaffold_3862 | 43264 | Unannotated |
| Scaffold_3866 | 60168 | Unannotated |
| Scaffold_3872 | 29792 | Unannotated |
| Scaffold_3872 | 48138 | Unannotated |
| Scaffold_3873 | 49286 | Unannotated |
| Scaffold_3878 | 32012 | Unannotated |
| Scaffold_3878 | 32278 | Unannotated |
| Scaffold_3883 | 40649 | Unannotated |
| Scaffold_3883 | 40670 | Unannotated |