| SNPs Id | Position | Function |
| Scaffold_3911 | 6544 | Unannotated |
| Scaffold_3911 | 45853 | Unannotated |
| Scaffold_3920 | 4707 | Unannotated |
| Scaffold_3921 | 9591 | Unannotated |
| Scaffold_3922 | 20369 | Unannotated |
| Scaffold_3929 | 48231 | Unannotated |
| Scaffold_3933 | 30971 | Unannotated |
| Scaffold_3934 | 11337 | Unannotated |
| Scaffold_3934 | 11879 | Unannotated |
| Scaffold_3934 | 41995 | Unannotated |
| Scaffold_3937 | 3196 | NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1) |
| Scaffold_3942 | 3813 | Unannotated |
| Scaffold_3942 | 3814 | Unannotated |
| Scaffold_3942 | 33271 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3942 | 33386 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3942 | 35335 | Unannotated |
| Scaffold_3944 | 3525 | Unannotated |
| Scaffold_3948 | 6533 | Protein transport protein SEC16A homolog (Protein MAIGO 5) |
| Scaffold_3948 | 25596 | Unannotated |
| Scaffold_3950 | 1071 | Unannotated |