| SNPs Id | Position | Function |
| Scaffold_3951 | 2630 | Unannotated |
| Scaffold_3954 | 35783 | Unannotated |
| Scaffold_3954 | 35980 | Unannotated |
| Scaffold_3954 | 43494 | Unannotated |
| Scaffold_3961 | 56305 | Unannotated |
| Scaffold_3968 | 30255 | Unannotated |
| Scaffold_3969 | 45054 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3969 | 45158 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3971 | 25397 | Unannotated |
| Scaffold_3979 | 4127 | Unannotated |
| Scaffold_3980 | 41371 | Unannotated |
| Scaffold_3991 | 21612 | Unannotated |
| Scaffold_3996 | 20350 | Unannotated |
| Scaffold_3998 | 26460 | Unannotated |
| Scaffold_4003 | 17061 | Unannotated |
| Scaffold_4005 | 56362 | Unannotated |
| Scaffold_4007 | 22888 | Unannotated |
| Scaffold_4007 | 22890 | Unannotated |
| Scaffold_4007 | 22891 | Unannotated |
| Scaffold_4007 | 31541 | Unannotated |