| SNPs Id | Position | Function |
| Scaffold_41 | 1498662 | Unannotated |
| Scaffold_41 | 1524502 | Unannotated |
| Scaffold_41 | 1560123 | Unannotated |
| Scaffold_41 | 1676525 | Probable leucine-rich repeat receptor-like protein kinase At1g35710 (EC 2.7.11.1) |
| Scaffold_42 | 100873 | Unannotated |
| Scaffold_42 | 197614 | Unannotated |
| Scaffold_42 | 217598 | Unannotated |
| Scaffold_42 | 761990 | Unannotated |
| Scaffold_42 | 822571 | Unannotated |
| Scaffold_42 | 822683 | Unannotated |
| Scaffold_42 | 985629 | Unannotated |
| Scaffold_42 | 1091288 | Unannotated |
| Scaffold_42 | 1092190 | Unannotated |
| Scaffold_42 | 1092390 | Unannotated |
| Scaffold_42 | 1092410 | Unannotated |
| Scaffold_42 | 1092467 | Unannotated |
| Scaffold_42 | 1092494 | Unannotated |
| Scaffold_42 | 1095897 | Unannotated |
| Scaffold_42 | 1096432 | Unannotated |
| Scaffold_42 | 1393280 | APO protein 1, chloroplastic (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE 1) |