| SNPs Id | Position | Function |
| Scaffold_55 | 196284 | Unannotated |
| Scaffold_55 | 206428 | Unannotated |
| Scaffold_55 | 243855 | Unannotated |
| Scaffold_55 | 268286 | Ribonuclease III domain-containing protein RNC1, chloroplastic (Chloroplast ribonuclease III domain protein) |
| Scaffold_55 | 283787 | Unannotated |
| Scaffold_55 | 333507 | Unannotated |
| Scaffold_55 | 334060 | Unannotated |
| Scaffold_55 | 342876 | Unannotated |
| Scaffold_55 | 599261 | Unannotated |
| Scaffold_55 | 797806 | KDEL-tailed cysteine endopeptidase CEP2 (EC 3.4.22.-) |
| Scaffold_55 | 814484 | Unannotated |
| Scaffold_55 | 843546 | Unannotated |
| Scaffold_55 | 927894 | Unannotated |
| Scaffold_55 | 932446 | Unannotated |
| Scaffold_55 | 1020295 | Unannotated |
| Scaffold_55 | 1041627 | Unannotated |
| Scaffold_55 | 1247272 | Unannotated |
| Scaffold_55 | 1247373 | Unannotated |
| Scaffold_55 | 1247379 | Unannotated |
| Scaffold_56 | 99034 | Unannotated |