| SNPs Id | Position | Function |
| Scaffold_56 | 315525 | Unannotated |
| Scaffold_56 | 649141 | Unannotated |
| Scaffold_56 | 746160 | Unannotated |
| Scaffold_56 | 885223 | Unannotated |
| Scaffold_56 | 1081231 | Unannotated |
| Scaffold_56 | 1084900 | Unannotated |
| Scaffold_56 | 1084994 | Unannotated |
| Scaffold_56 | 1085532 | Unannotated |
| Scaffold_56 | 1085914 | Unannotated |
| Scaffold_56 | 1102030 | Unannotated |
| Scaffold_56 | 1198950 | Unannotated |
| Scaffold_56 | 1217431 | Unannotated |
| Scaffold_57 | 32748 | Unannotated |
| Scaffold_57 | 66646 | Unannotated |
| Scaffold_57 | 859503 | Unannotated |
| Scaffold_57 | 861327 | Unannotated |
| Scaffold_57 | 934273 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_57 | 934412 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_57 | 1338026 | Beta-galactosidase 1 (Lactase 1) (EC 3.2.1.23) |
| Scaffold_57 | 1375825 | Unannotated |