| SNPs Id | Position | Function |
| Scaffold_237 | 11766 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_239 | 75170 | Unannotated |
| Scaffold_242 | 74164 | 28 kDa ribonucleoprotein, chloroplastic (28RNP) |
| Scaffold_244 | 51840 | Unannotated |
| Scaffold_245 | 23352 | Unannotated |
| Scaffold_248 | 1102 | Unannotated |
| Scaffold_248 | 1106 | Unannotated |
| Scaffold_251 | 55011 | Unannotated |
| Scaffold_252 | 70485 | Protein GIGANTEA |
| Scaffold_256 | 39432 | Unannotated |
| Scaffold_256 | 39510 | Unannotated |
| Scaffold_259 | 69895 | Unannotated |
| Scaffold_261 | 84180 | Unannotated |
| Scaffold_264 | 1597 | Unannotated |
| Scaffold_264 | 79471 | Unannotated |
| Scaffold_273 | 51467 | Unannotated |
| Scaffold_274 | 9848 | Unannotated |
| Scaffold_275 | 2530 | Unannotated |
| Scaffold_275 | 51942 | Ubiquitin carboxyl-terminal hydrolase 23 (EC 3.4.19.12) (Deubiquitinating enzyme 23) (AtUBP23) (Ubiquitin thioesterase 23) (Ubiquitin-specific-processing protease 23) |
| Scaffold_280 | 5624 | Unannotated |